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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9127096_9127454_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9127096 - 9127454
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CTGCTCTCACGC
Flanking Amino Acid:
KKVATPVDWKPGDSVMVVPT
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
72.7
0.56
1
75
30.1
Major PPT
75.5
0.57
0.8
66.5
35.6
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
41
-0.7
2
46.88
42.7

Associated Gene:

Gene:
PRDX6
Ensembl Gene ID:
ENSAPLG00000016432
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017148
9126964 - 9131961
4998