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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9127602_9128101_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9127602 - 9128101
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
GGAGCCTGACTC
Flanking Amino Acid:
KDGMPLTARVVFVFGPDKKL
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
69.5
0.44
1
67.7
37.7
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
45
-0.3
1.8
49.67
40.5

Associated Gene:

Gene:
PRDX6
Ensembl Gene ID:
ENSAPLG00000016432
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017148
9126964 - 9131961
4998