About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9128249_9131585_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9128249 - 9131585
Intron Length:
3337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
TTTGTCTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAC
U12 Branch Point Sequence:
TCCCCTGTACAC
Flanking Amino Acid:
SVPDHLAWSKDINAYNGEQP
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
57.7
0.19
1.2
66.7
40
Major PPT
82.2
0.72
0.8
77.4
31.3
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
40.4
-0.7
2.2
47.99
42.2

Associated Gene:

Gene:
PRDX6
Ensembl Gene ID:
ENSAPLG00000016432
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017148
9126964 - 9131961
4998