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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9132405_9132611_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9132405 - 9132611
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGCA
5'SS Class:
major
3'SS Sequence:
TGTCCCCACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TGTTACTGACGG
Flanking Amino Acid:
EARRLLTQDNVHSHNDFLLA
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
63.1
37.1
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
68.6
0.42
0.9
62.5
33.5
Minor 5ss
24.5
-2.9
3.3
30.5
42.8
Minor BPS
44
-0.6
2.2
54.08
46.2

Associated Gene:

Gene:
TADA1
Ensembl Gene ID:
ENSAPLG00000005434
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005616
9132168 - 9144693
12526