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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9132678_9138292_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9132678 - 9138292
Intron Length:
5615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTTCTCATTT
Flanking Amino Acid:
TRCQILVSAPEGAGSLPWPG
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.3
0.7
0.8
76.7
31.5
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
55.5
0.25
1.8
75.31
42.2

Associated Gene:

Gene:
TADA1
Ensembl Gene ID:
ENSAPLG00000005434
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005616
9132168 - 9144693
12526