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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9138391_9141238_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9138391 - 9141238
Intron Length:
2848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCATCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATGCTCTAATT
Flanking Amino Acid:
KISSVRQKFDHRFQPQNPLS
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
81.7
30
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
71.8
0.49
1
62.8
43
Minor 5ss
39.7
-1.2
3.4
57.1
40.8
Minor BPS
59.4
0.37
1.8
77.53
39.3

Associated Gene:

Gene:
TADA1
Ensembl Gene ID:
ENSAPLG00000005434
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005616
9132168 - 9144693
12526