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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9150956_9151757_R

Intron Information:

Intron Rank:
153904
Intron Class:
major
Intron Phase:
Intron Coordinates:
9150956 - 9151757
Intron Length:
802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCCCT
5'SS Class:
major
3'SS Sequence:
CATTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGCTTCTCAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
62.3
43.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
86.9
0.83
0.7
84.9
29.5
Minor 5ss
34.6
-1.7
3.1
40.8
45
Minor BPS
51.5
0.03
1.9
62.67
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030292
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028847
9149222 - 9154240
5019