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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_930306_933320_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
930306 - 933320
Intron Length:
3015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGACCTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTTTTCTGACCT
Flanking Amino Acid:
KDQIAELHHEAAVPVKQLYY
Intron Amino Acid Position:
724

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
66.2
0.36
1
61.1
40
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
60.7
0.41
1.8
80.07
42.1

Associated Gene:

Gene:
EVI5
Ensembl Gene ID:
ENSAPLG00000015768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044062
929293 - 976526
47234
ENSAPLT00000043084
929293 - 976526
47234