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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9309116_9310216_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9309116 - 9310216
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATTC
5'SS Class:
major
3'SS Sequence:
CTCTTTCTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TCTTTCTTATAG
Flanking Amino Acid:
SQSFQLSGKEVDQEDLYIVE
Intron Amino Acid Position:
1079

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
70.5
34.3
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
84.3
0.77
0.7
79.8
25.8
Minor 5ss
48.7
-0.1
2.7
68.2
42.9
Minor BPS
57.3
0.09
1.8
63.88
44.1

Associated Gene:

Gene:
SUCO
Ensembl Gene ID:
ENSAPLG00000004827
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038122
9308463 - 9347655
39193
ENSAPLT00000005004
9308463 - 9347655
39193