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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9310775_9312084_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9310775 - 9312084
Intron Length:
1310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
CAAATTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TAGTCTTTAACA
Flanking Amino Acid:
STTVAELKREVSDRQTYLVI
Intron Amino Acid Position:
997

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
73.9
0.54
0.9
69.8
40.8
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
80.2
0.94
1.1
80.41
35.4

Associated Gene:

Gene:
SUCO
Ensembl Gene ID:
ENSAPLG00000004827
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038122
9308463 - 9347655
39193
ENSAPLT00000005004
9308463 - 9347655
39193