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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9313629_9314534_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9313629 - 9314534
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
CATTTCAGATCT
Flanking Amino Acid:
SSRYLEELSQRYRKQMEEMQ
Intron Amino Acid Position:
932

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
75.5
0.63
1
66
40.9
Major PPT
82.5
0.73
0.9
81.2
36.5
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
46.4
-0.2
2
66.7
43.6

Associated Gene:

Gene:
SUCO
Ensembl Gene ID:
ENSAPLG00000004827
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038122
9308463 - 9347655
39193
ENSAPLT00000005004
9308463 - 9347655
39193