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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9317370_9320417_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9317370 - 9320417
Intron Length:
3048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTGTCCTCATCA
Flanking Amino Acid:
SSKNLLGSATNAILSMVNIA
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
81.8
0.72
0.8
78.4
34.7
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
62.7
0.4
1.8
75.72
41.7

Associated Gene:

Gene:
SUCO
Ensembl Gene ID:
ENSAPLG00000004827
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038122
9308463 - 9347655
39193
ENSAPLT00000005004
9308463 - 9347655
39193