Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9320484_9321173_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9320484 - 9321173

Intron Length:

690

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGCAAT

5'SS Class:

major

3'SS Sequence:

TCTTTATTCATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

TCTTCTTTATTC

Flanking Amino Acid:

ERQELFDEDYDYLLDYNTGE

Intron Amino Acid Position:

466

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.1

70.6

41.3

Major BPS

90.7

1.01

0.7

19.9

Major PPT

80.8

0.69

0.7

76.6

30.9

Minor 5ss

39.8

-1.1

3.2

53.5

Minor BPS

66.8

0.51

1.5

73.5

38.4

Associated Gene:

Gene:

SUCO

Ensembl Gene ID:

ENSAPLG00000004827

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038122

9308463 - 9347655

39193

ENSAPLT00000005004

9308463 - 9347655

39193