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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9322333_9322581_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9322333 - 9322581
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCAAT
5'SS Class:
major
3'SS Sequence:
TTTTATTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCATTTTAAGT
Flanking Amino Acid:
YVKMFIKYIKVELISHFGSE
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.1
79.1
36.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.7
0.8
0.7
81.9
29.7
Minor 5ss
37.4
-1.4
2.8
49.1
46.8
Minor BPS
60
0.39
1.7
75.45
41.9

Associated Gene:

Gene:
SUCO
Ensembl Gene ID:
ENSAPLG00000004827
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005004
9308463 - 9347655
39193