Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9324976_9325334_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9324976 - 9325334

Intron Length:

359

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTTAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

ATTTCATTAGAT

Flanking Amino Acid:

PKDFLVSISDRYPTNKWIKL

Intron Amino Acid Position:

374

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.8

85.7

25.6

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

87.7

0.85

0.7

81.2

36.5

Minor 5ss

-0.2

2.5

66.4

45.1

Minor BPS

58.9

0.36

1.9

81.56

39.2

Associated Gene:

Gene:

SUCO

Ensembl Gene ID:

ENSAPLG00000004827

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038122

9308463 - 9347655

39193

ENSAPLT00000005004

9308463 - 9347655

39193