About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_933417_944137_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
933417 - 944137
Intron Length:
10721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAGT
5'SS Class:
strong_major
3'SS Sequence:
TAAATCAAAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTTAAAT
Flanking Amino Acid:
QQHIAELEIQKEEGKIQGQL
Intron Amino Acid Position:
680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
77.4
37.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
55.4
0.12
1.1
49.2
42.4
Minor 5ss
35.3
-1.7
3
50
45.8
Minor BPS
72.6
0.79
1.3
84.29
36.6

Associated Gene:

Gene:
EVI5
Ensembl Gene ID:
ENSAPLG00000015768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029498
913107 - 985368
72262
ENSAPLT00000027562
913107 - 985368
72262
ENSAPLT00000044062
929293 - 976526
47234
ENSAPLT00000026338
913107 - 975964
62858
ENSAPLT00000043084
929293 - 976526
47234
ENSAPLT00000016487
913107 - 975883
62777
ENSAPLT00000033885
913107 - 975964
62858