About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9379110_9380146_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9379110 - 9380146
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
GATGTTTCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AATGTCTTAAAT
Flanking Amino Acid:
VDDSWLQQARRSPPPSPSTQ
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
63.6
0.31
1
56.2
44.2
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
64.7
0.54
1.5
76.59
39.6

Associated Gene:

Gene:
DNM3
Ensembl Gene ID:
ENSAPLG00000004816
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028341
9378869 - 9540029
161161