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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9416790_9427938_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9416790 - 9427938
Intron Length:
11149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTCATTTTACA
Flanking Amino Acid:
HIFALFNTEQRNVYKDYRFL
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.4
0.66
0.8
72.5
37.7
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
51.2
0.03
1.8
65.66
40.4

Associated Gene:

Gene:
DNM3
Ensembl Gene ID:
ENSAPLG00000004816
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004961
9378869 - 9539795
160927
ENSAPLT00000046644
9378869 - 9539795
160927
ENSAPLT00000046547
9375933 - 9539795
163863
ENSAPLT00000028341
9378869 - 9540029
161161