About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9499024_9502663_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9499024 - 9502663
Intron Length:
3640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCGCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTGTATTATTT
Flanking Amino Acid:
INTVKKCTKKLATYPRLCEE
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1.1
76.2
39.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
87.3
0.84
0.7
84.7
30.2
Minor 5ss
40
-1.1
3.3
58.7
45.8
Minor BPS
51.9
0.14
1.9
76.22
41

Associated Gene:

Gene:
DNM3
Ensembl Gene ID:
ENSAPLG00000004816
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046547
9375933 - 9539795
163863
ENSAPLT00000028341
9378869 - 9540029
161161
ENSAPLT00000004961
9378869 - 9539795
160927