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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_950437_958406_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
950437 - 958406
Intron Length:
7970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
TTCATTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ACATACTTAAGA
Flanking Amino Acid:
IRELQHQQQWRNSSLPDEEN
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.8
43.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
80.8
0.69
0.9
72.6
42.2
Minor 5ss
32.2
-2
3.1
34.8
41.4
Minor BPS
55.6
0.17
1.8
63.64
42.4

Associated Gene:

Gene:
EVI5
Ensembl Gene ID:
ENSAPLG00000015768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033885
913107 - 975964
62858