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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9504716_9505754_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9504716 - 9505754
Intron Length:
1039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATGATTTCAAAT
Flanking Amino Acid:
HERFPFELVKMEFNEKELRR
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
79.8
33.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
84.8
0.78
0.7
77.9
36.6
Minor 5ss
46.5
-0.4
2.5
63.1
41.4
Minor BPS
48.4
-0
1.6
64.21
40.1

Associated Gene:

Gene:
DNM3
Ensembl Gene ID:
ENSAPLG00000004816
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046547
9375933 - 9539795
163863
ENSAPLT00000028341
9378869 - 9540029
161161
ENSAPLT00000004961
9378869 - 9539795
160927
ENSAPLT00000046644
9378869 - 9539795
160927