About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9509535_9513008_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9509535 - 9513008
Intron Length:
3474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTATTAACAACA
Flanking Amino Acid:
TPYLQKVLNQQLTNHIRDTL
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.4
38.4
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
80.6
0.69
0.8
78.2
35.7
Minor 5ss
34
-1.8
3.3
49.1
46.6
Minor BPS
47.6
-0.1
2
66.87
38.8

Associated Gene:

Gene:
DNM3
Ensembl Gene ID:
ENSAPLG00000004816
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028341
9378869 - 9540029
161161
ENSAPLT00000004961
9378869 - 9539795
160927
ENSAPLT00000046644
9378869 - 9539795
160927
ENSAPLT00000046547
9375933 - 9539795
163863