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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9514655_9515484_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9514655 - 9515484
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTTTCCATACAG
Flanking Amino Acid:
PINLRIYSPHVLSLTLIDLP
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
75.9
35.2
Major BPS
84.6
0.86
1
74
41.2
Major PPT
79.8
0.67
0.9
73.8
36
Minor 5ss
33.8
-1.8
3
38.1
42.1
Minor BPS
54.2
-0
2.1
69.83
43

Associated Gene:

Gene:
DNM3
Ensembl Gene ID:
ENSAPLG00000004816
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028341
9378869 - 9540029
161161
ENSAPLT00000004961
9378869 - 9539795
160927
ENSAPLT00000004936
9512207 - 9539795
27589
ENSAPLT00000046644
9378869 - 9539795
160927
ENSAPLT00000046547
9375933 - 9539795
163863