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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9515635_9524075_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9515635 - 9524075
Intron Length:
8441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATATTTTTCACA
Flanking Amino Acid:
LVLQLVTAKTEYAEFLHCKG
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
35.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
81.5
0.71
0.8
76.5
36.8
Minor 5ss
40.9
-1
3.2
59.5
45
Minor BPS
58.7
0.27
1.7
69.76
36.7

Associated Gene:

Gene:
DNM3
Ensembl Gene ID:
ENSAPLG00000004816
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004961
9378869 - 9539795
160927
ENSAPLT00000004936
9512207 - 9539795
27589
ENSAPLT00000046644
9378869 - 9539795
160927
ENSAPLT00000046547
9375933 - 9539795
163863
ENSAPLT00000028341
9378869 - 9540029
161161