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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9524150_9539649_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9524150 - 9539649
Intron Length:
15500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TTTATATTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATAT
Flanking Amino Acid:
KSSVLENCVSRDFLPRGSGI
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.9
0.72
0.8
74.5
40.2
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
58.3
0.34
1.7
76.11
41

Associated Gene:

Gene:
DNM3
Ensembl Gene ID:
ENSAPLG00000004816
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004961
9378869 - 9539795
160927
ENSAPLT00000004936
9512207 - 9539795
27589
ENSAPLT00000046644
9378869 - 9539795
160927
ENSAPLT00000046547
9375933 - 9539795
163863
ENSAPLT00000028341
9378869 - 9540029
161161