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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_952482_958406_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
952482 - 958406
Intron Length:
5925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
GCAAACTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TCATACTAAACG
Flanking Amino Acid:
IRELQHQQQWHKCSSRYSED
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.8
43.5
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
62.3
0.28
1
54.5
40.7
Minor 5ss
32.2
-2
3.1
34.8
41.4
Minor BPS
53.8
-0
2
61.1
46.3

Associated Gene:

Gene:
EVI5
Ensembl Gene ID:
ENSAPLG00000015768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029498
913107 - 985368
72262
ENSAPLT00000026338
913107 - 975964
62858
ENSAPLT00000016487
913107 - 975883
62777
ENSAPLT00000044062
929293 - 976526
47234