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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9569874_9570024_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9569874 - 9570024
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACTGCCA
5'SS Class:
weak_major
3'SS Sequence:
TCTGTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CTGTCCTAACGT
Flanking Amino Acid:
ALGRPRAEDSDCGELAWVGA
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.4
0.2
1.2
47.1
42.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
75.7
0.58
0.8
69.7
31.1
Minor 5ss
29.6
-2.3
3.3
31.1
42.4
Minor BPS
47
-0.1
2.2
66.78
49.8

Associated Gene:

Gene:
MYOC
Ensembl Gene ID:
ENSAPLG00000016603
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029605
9569222 - 9570809
1588