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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9576549_9581111_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9576549 - 9581111
Intron Length:
4563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TCTTCAGTAAAT
Flanking Amino Acid:
QPFPAQFAPQAKQRAEVLQS
Intron Amino Acid Position:
2571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
72.3
39.5
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
74
0.54
1
78.5
27.6
Minor 5ss
38.3
-1.3
3.1
50.7
46.2
Minor BPS
51.2
0.12
2.3
78.39
43.5

Associated Gene:

Gene:
PRRC2C
Ensembl Gene ID:
ENSAPLG00000003698
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045233
9575375 - 9644273
68899
ENSAPLT00000039159
9576288 - 9644273
67986
ENSAPLT00000003853
9576288 - 9644273
67986