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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9582588_9584395_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9582588 - 9584395
Intron Length:
1808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATAACA
5'SS Class:
major
3'SS Sequence:
TTGTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TCCTACTGAACT
Flanking Amino Acid:
QHSMIAATGKISEMDLKAFG
Intron Amino Acid Position:
2494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
72.3
31.9
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
83.8
0.76
0.9
81
36.6
Minor 5ss
28.4
-2.5
2.7
32.9
41.5
Minor BPS
63.2
0.49
1.7
77.85
44.1

Associated Gene:

Gene:
PRRC2C
Ensembl Gene ID:
ENSAPLG00000003698
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003853
9576288 - 9644273
67986
ENSAPLT00000045233
9575375 - 9644273
68899
ENSAPLT00000039159
9576288 - 9644273
67986