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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_958554_959078_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
958554 - 959078
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTCT
5'SS Class:
major
3'SS Sequence:
ATTATGTCCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTGTCCTCAATT
Flanking Amino Acid:
SASLADRLIQGQVTRAQEAE
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.1
37.3
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
62.1
0.27
1.1
64.8
40.9
Minor 5ss
44.8
-0.6
3.2
65.3
46.1
Minor BPS
75.7
0.88
1.5
88.28
37.2

Associated Gene:

Gene:
EVI5
Ensembl Gene ID:
ENSAPLG00000015768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044062
929293 - 976526
47234
ENSAPLT00000033885
913107 - 975964
62858
ENSAPLT00000029498
913107 - 985368
72262
ENSAPLT00000026338
913107 - 975964
62858