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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9588307_9588830_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9588307 - 9588830
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AGATATTTAATG
Flanking Amino Acid:
QQGFQPGLSQPASVQQIPIP
Intron Amino Acid Position:
2261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88.7
0.87
0.6
84.3
23.6
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
55.7
0.04
1.5
56.49
38.9

Associated Gene:

Gene:
PRRC2C
Ensembl Gene ID:
ENSAPLG00000003698
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045233
9575375 - 9644273
68899
ENSAPLT00000039159
9576288 - 9644273
67986
ENSAPLT00000003853
9576288 - 9644273
67986