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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9591014_9597024_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9591014 - 9597024
Intron Length:
6011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TCTTTTTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAAAT
Flanking Amino Acid:
TKMEETLVTNMESARKAWEN
Intron Amino Acid Position:
2080

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
78
38.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.6
0.58
0.9
74.1
34.4
Minor 5ss
39.2
-1.2
3
49.5
40.1
Minor BPS
72.7
0.79
1.3
84.29
36.6

Associated Gene:

Gene:
PRRC2C
Ensembl Gene ID:
ENSAPLG00000003698
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039159
9576288 - 9644273
67986