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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_959112_961394_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
959112 - 961394
Intron Length:
2283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCTTATTC
Flanking Amino Acid:
LKQRIETLEKESASLADRLI
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
85.1
0.79
0.7
81.1
30.5
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
78.4
0.87
1.5
86.27
31.8

Associated Gene:

Gene:
EVI5
Ensembl Gene ID:
ENSAPLG00000015768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029498
913107 - 985368
72262
ENSAPLT00000027562
913107 - 985368
72262
ENSAPLT00000026338
913107 - 975964
62858
ENSAPLT00000044062
929293 - 976526
47234
ENSAPLT00000033885
913107 - 975964
62858