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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9604382_9605334_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9604382 - 9605334
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGCCTTTTAAAT
Flanking Amino Acid:
TSFGSATSPEGTKPGQEGGV
Intron Amino Acid Position:
1903

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
65
0.34
1
62
37.9
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
59.2
0.37
1.4
70.85
40

Associated Gene:

Gene:
PRRC2C
Ensembl Gene ID:
ENSAPLG00000003698
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039159
9576288 - 9644273
67986
ENSAPLT00000003853
9576288 - 9644273
67986
ENSAPLT00000045233
9575375 - 9644273
68899