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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9605421_9605875_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9605421 - 9605875
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCACTTATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTAACT
Flanking Amino Acid:
SAVLNDISKKLGPISPPQPP
Intron Amino Acid Position:
1874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.5
0.57
0.9
74
35
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
83.8
1.14
0.9
92.59
29.1

Associated Gene:

Gene:
PRRC2C
Ensembl Gene ID:
ENSAPLG00000003698
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045233
9575375 - 9644273
68899
ENSAPLT00000039159
9576288 - 9644273
67986
ENSAPLT00000003853
9576288 - 9644273
67986