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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9607689_9608681_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9607689 - 9608681
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATAATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTCTTAACA
Flanking Amino Acid:
SGPPPRSGKRGPFEDQTATV
Intron Amino Acid Position:
1637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.8
35.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80
0.67
0.9
75.1
38.4
Minor 5ss
36.6
-1.5
2.6
39.1
38.9
Minor BPS
87.1
1.16
0.9
89.52
25.5

Associated Gene:

Gene:
PRRC2C
Ensembl Gene ID:
ENSAPLG00000003698
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003853
9576288 - 9644273
67986
ENSAPLT00000045233
9575375 - 9644273
68899
ENSAPLT00000039159
9576288 - 9644273
67986