Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9611049_9611759_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9611049 - 9611759

Intron Length:

711

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCCTG

5'SS Class:

strong_major

3'SS Sequence:

TGCCTTTTCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ACATTTTTAATT

Flanking Amino Acid:

PKVLEETDNLRSEAHLEQER

Intron Amino Acid Position:

848

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

72.7

44.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

77.1

0.61

0.8

76.3

32.2

Minor 5ss

41.5

-0.9

3.1

55.8

48.4

Minor BPS

68.3

0.65

1.1

74.15

37.4

Associated Gene:

Gene:

PRRC2C

Ensembl Gene ID:

ENSAPLG00000003698

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045233

9575375 - 9644273

68899

ENSAPLT00000039159

9576288 - 9644273

67986

ENSAPLT00000003853

9576288 - 9644273

67986