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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_961449_963308_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
961449 - 963308
Intron Length:
1860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGCG
5'SS Class:
major
3'SS Sequence:
GTTTACGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
CAATTCTGAATT
Flanking Amino Acid:
KEMEEQVEIKRLRTENRLLK
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.2
38
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
76.8
0.6
1
69.6
41.2
Minor 5ss
32.5
-2
3.3
40.1
39.6
Minor BPS
60.5
0.41
1.4
70.52
40.5

Associated Gene:

Gene:
EVI5
Ensembl Gene ID:
ENSAPLG00000015768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029498
913107 - 985368
72262
ENSAPLT00000027562
913107 - 985368
72262
ENSAPLT00000044062
929293 - 976526
47234
ENSAPLT00000026338
913107 - 975964
62858
ENSAPLT00000043084
929293 - 976526
47234
ENSAPLT00000016487
913107 - 975883
62777
ENSAPLT00000033885
913107 - 975964
62858