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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9617306_9617590_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9617306 - 9617590
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTTTCTTACTT
Flanking Amino Acid:
QGSSQKEKESGDEQTPTKDS
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
42.7
Major BPS
84
0.85
0.9
75
39.9
Major PPT
79
0.65
0.9
75.1
33.3
Minor 5ss
33.7
-1.9
2.8
31.9
42.5
Minor BPS
75.4
0.88
1.5
91.07
32.9

Associated Gene:

Gene:
PRRC2C
Ensembl Gene ID:
ENSAPLG00000003698
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045233
9575375 - 9644273
68899
ENSAPLT00000039159
9576288 - 9644273
67986
ENSAPLT00000003853
9576288 - 9644273
67986