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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9617679_9617761_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9617679 - 9617761
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
GCTTATGCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCCTTCTGAATG
Flanking Amino Acid:
LDAEADEGWAGAQSEVDYTE
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
65.6
0.35
1
63
42.7
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
58.3
0.12
1.5
59.15
43.4

Associated Gene:

Gene:
PRRC2C
Ensembl Gene ID:
ENSAPLG00000003698
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045233
9575375 - 9644273
68899
ENSAPLT00000039159
9576288 - 9644273
67986
ENSAPLT00000003853
9576288 - 9644273
67986