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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9617896_9618858_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9617896 - 9618858
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTCTCTTTATT
Flanking Amino Acid:
PTRFPNSEPSRGPRGRGPPS
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
80.4
0.68
0.8
81.8
28.5
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
67.4
0.63
1.6
85.04
35.1

Associated Gene:

Gene:
PRRC2C
Ensembl Gene ID:
ENSAPLG00000003698
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039159
9576288 - 9644273
67986
ENSAPLT00000003853
9576288 - 9644273
67986
ENSAPLT00000045233
9575375 - 9644273
68899