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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9618939_9619302_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9618939 - 9619302
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
AAACTTTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGGTTTTTAACA
Flanking Amino Acid:
SQYRAMMPPYMFNQYPRMAY
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73
0.52
0.9
70.4
40.1
Minor 5ss
36.8
-1.5
3.4
53.8
43.7
Minor BPS
73.6
0.74
1.2
75.27
36.4

Associated Gene:

Gene:
PRRC2C
Ensembl Gene ID:
ENSAPLG00000003698
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039159
9576288 - 9644273
67986
ENSAPLT00000003853
9576288 - 9644273
67986
ENSAPLT00000045233
9575375 - 9644273
68899