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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9619524_9620412_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9619524 - 9620412
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTTCTCGTACT
Flanking Amino Acid:
HGSGPSLRPQNATNWREGGN
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
73
0.52
1
67
38.3
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
51.7
0.14
2.1
81.83
39.3

Associated Gene:

Gene:
PRRC2C
Ensembl Gene ID:
ENSAPLG00000003698
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045233
9575375 - 9644273
68899
ENSAPLT00000039159
9576288 - 9644273
67986
ENSAPLT00000003853
9576288 - 9644273
67986