Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9626434_9627631_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9626434 - 9627631

Intron Length:

1198

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTGACATGTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

TCTATTTTGACA

Flanking Amino Acid:

GKSLETQKTTVATRHGLQSL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.8

1.01

0.7

85.4

19.4

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

0.52

0.9

67.8

38.2

Minor 5ss

34.1

-1.8

2.8

39.9

46.1

Minor BPS

64.1

0.44

1.3

36.5

Associated Gene:

Gene:

PRRC2C

Ensembl Gene ID:

ENSAPLG00000003698

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045233

9575375 - 9644273

68899

ENSAPLT00000039159

9576288 - 9644273

67986

ENSAPLT00000003853

9576288 - 9644273

67986