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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_963370_964679_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
963370 - 964679
Intron Length:
1310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTATA
5'SS Class:
major
3'SS Sequence:
TTCCAATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCATCCTTAATG
Flanking Amino Acid:
QVKYNAKKMKKLEKEYTTIK
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
80.8
33.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
76.4
0.59
0.8
73.9
35.4
Minor 5ss
39.6
-1.2
3.1
50.6
40.3
Minor BPS
76.9
0.71
1.3
72.09
41.1

Associated Gene:

Gene:
EVI5
Ensembl Gene ID:
ENSAPLG00000015768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027562
913107 - 985368
72262
ENSAPLT00000044062
929293 - 976526
47234
ENSAPLT00000026338
913107 - 975964
62858
ENSAPLT00000043084
929293 - 976526
47234
ENSAPLT00000016487
913107 - 975883
62777
ENSAPLT00000033885
913107 - 975964
62858
ENSAPLT00000029498
913107 - 985368
72262