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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_964778_964884_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
964778 - 964884
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGATTGCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TGTGCTCTGATT
Flanking Amino Acid:
LQLDMEGMLQHFQKVIPHQF
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
73.4
0.53
0.9
70.3
41
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
51.2
0.12
1.8
72.08
39.4

Associated Gene:

Gene:
EVI5
Ensembl Gene ID:
ENSAPLG00000015768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027562
913107 - 985368
72262
ENSAPLT00000044062
929293 - 976526
47234
ENSAPLT00000026338
913107 - 975964
62858
ENSAPLT00000043084
929293 - 976526
47234
ENSAPLT00000016487
913107 - 975883
62777
ENSAPLT00000033885
913107 - 975964
62858
ENSAPLT00000029498
913107 - 985368
72262