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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9651653_9651823_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9651653 - 9651823
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCCATGTGCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TCTTTCTCCATG
Flanking Amino Acid:
HEIYGLASVKSSNFHVIINE
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
52.5
0.06
1.2
51.3
41.7
Minor 5ss
36.9
-1.5
3.2
48.2
47.9
Minor BPS
48.3
-0.2
2
58.48
44.1

Associated Gene:

Gene:
FMO4
Ensembl Gene ID:
ENSAPLG00000003552
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003616
9649730 - 9654272
4543