About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9652024_9652636_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
9652024 - 9652636

Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACAGAGC

5'SS Class:
major

3'SS Sequence:
CCTTCTCCGCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CCCTCAG

U12 Branch Point Sequence:
AGGCCCTCAGGC

Flanking Amino Acid:
AVELSHVAAKVFLSARSNTW

Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.4
0.48
1.1
61.3
43.5

Major BPS
48.4
-0.1
1.5
56.9
40.5

Major PPT
72
0.5
0.9
65.5
36.1

Minor 5ss
30.9
-2.2
3.4
43.1
44.1

Minor BPS
42.3
-0.6
1.9
47.63
41.4

Associated Gene:

Gene:
FMO4

Ensembl Gene ID:

Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

9649730 - 9654272
4543