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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9653247_9653571_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9653247 - 9653571
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCTGG
5'SS Class:
major
3'SS Sequence:
GTTTTGGTGTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTGACCGCAATT
Flanking Amino Acid:
FQLLQHIRFKTTVLSVRKRP
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
56.7
45
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
59
0.2
1.3
63.8
46.3
Minor 5ss
36.4
-1.5
3.2
46.4
49
Minor BPS
45.9
-0.2
2.2
64.5
46.2

Associated Gene:

Gene:
FMO4
Ensembl Gene ID:
ENSAPLG00000003552
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003616
9649730 - 9654272
4543