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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_966256_966816_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
966256 - 966816
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTAATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTGTTTTAATA
Flanking Amino Acid:
AFIVGLLLMQMPEEEAFCVF
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
75.1
41.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.2
0.57
0.9
70.7
39
Minor 5ss
42.3
-0.8
3
56.9
47.4
Minor BPS
71.7
0.68
1.3
78
33.3

Associated Gene:

Gene:
EVI5
Ensembl Gene ID:
ENSAPLG00000015768
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043084
929293 - 976526
47234
ENSAPLT00000026338
913107 - 975964
62858
ENSAPLT00000033885
913107 - 975964
62858
ENSAPLT00000016487
913107 - 975883
62777
ENSAPLT00000029498
913107 - 985368
72262
ENSAPLT00000027562
913107 - 985368
72262
ENSAPLT00000044062
929293 - 976526
47234